Term: 16S recovery software (x16s_recover_software)

Tools used for 16S rRNA gene extraction

URI: MIXS:0000066

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use x16s_recover_software.

Name	Description	Checklist/Extension
Misag	Minimum Information About a Single Amplified Genome	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{software};{version};{parameters}$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
rambl;v2;default parameters

LinkML Source

name: x16s_recover_software
description: Tools used for 16S rRNA gene extraction
title: 16S recovery software
examples:
- value: rambl;v2;default parameters
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- recover
- software
slot_uri: MIXS:0000066
alias: x16s_recover_software
domain_of:
- Mimag
- Misag
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true