Term: taxonomic classification (tax_class)

Method used for taxonomic classification, along with reference database used, classification rank, and thresholds used to classify new genomes

URI: MIXS:0000064

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use tax_class.

Name	Description	Checklist/Extension
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
Mims	Metagenome or Environmental	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, default parameters)

LinkML Source

name: tax_class
description: Method used for taxonomic classification, along with reference database
  used, classification rank, and thresholds used to classify new genomes
title: taxonomic classification
examples:
- value: vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification,
    default parameters)
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- classification
- taxon
slot_uri: MIXS:0000064
alias: tax_class
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string