Term: annotation (annot)

Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter

URI: MIXS:0000059

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use annot.

Name	Description	Checklist/Extension
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
MimsMisip	Metagenome or Environmental with SIP	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
Mims	Metagenome or Environmental	Checklist

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
prokka

Annotations

• Expected_value: name of tool or pipeline used, or annotation source description

LinkML Source

name: annot
annotations:
  Expected_value:
    tag: Expected_value
    value: name of tool or pipeline used, or annotation source description
description: Tool used for annotation, or for cases where annotation was provided
  by a community jamboree or model organism database rather than by a specific submitter
title: annotation
examples:
- value: prokka
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000059
alias: annot
domain_of:
- MimsMisip
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
- Agriculture
range: string