Term: annotation (annot)
Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter
URI: MIXS:0000059
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use annot.
| Name | Description | Checklist/Extension |
|---|---|---|
| MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
| MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
| Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
| Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
| MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
| Mims | Metagenome or Environmental | Checklist |
| Misag | Minimum Information About a Single Amplified Genome | Checklist |
| MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
| MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
| Agriculture | A collection of terms appropriate when sequencing samples obtained in an agri... | Extension |
Properties
- Range: String
- Cardinality: 0..1
Examples
| Value |
|---|
| prokka |
Annotations
- Expected_value: name of tool or pipeline used, or annotation source description
LinkML Source
name: annot
annotations:
Expected_value:
tag: Expected_value
value: name of tool or pipeline used, or annotation source description
description: Tool used for annotation, or for cases where annotation was provided
by a community jamboree or model organism database rather than by a specific submitter
title: annotation
examples:
- value: prokka
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000059
alias: annot
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
- Agriculture
range: string