Term: assembly software (assembly_software)

Tool(s) used for assembly, including version number and parameters

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use assembly_software.

Name	Description	Checklist/Extension
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
MimarksS	Minimal Information about a Marker Sequence: survey	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
MimsMisip	Metagenome or Environmental with SIP	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
Mims	Metagenome or Environmental	Checklist

Properties

Range: String
Cardinality: 0..1
Structured pattern: ^{software};{version};{parameters}$

Examples

Value
metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise

LinkML Source

name: assembly_software
description: Tool(s) used for assembly, including version number and parameters
title: assembly software
examples:
- value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- software
slot_uri: MIXS:0000058
alias: assembly_software
domain_of:
- MimsMisip
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true