Term: chimera check software (chimera_check)

Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences

URI: MIXS:0000052

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use chimera_check.

Name	Description	Checklist/Extension
MimarksC	Minimal Information about a Marker Sequence: specimen	Checklist
MimarksS	Minimal Information about a Marker Sequence: survey	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{software};{version};{parameters}$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
uchime;v4.1;default parameters

LinkML Source

name: chimera_check
description: Tool(s) used for chimera checking, including version number and parameters,
  to discover and remove chimeric sequences. A chimeric sequence is comprised of two
  or more phylogenetically distinct parent sequences
title: chimera check software
examples:
- value: uchime;v4.1;default parameters
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- software
slot_uri: MIXS:0000052
alias: chimera_check
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true