Term: sequence quality check (seq_quality_check)
Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA
URI: MIXS:0000051
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use seq_quality_check.
| Name | Description | Checklist/Extension |
|---|---|---|
| MimarksS | Minimal Information about a Marker Sequence: survey | Checklist |
| MimarksC | Minimal Information about a Marker Sequence: specimen | Checklist |
| Agriculture | A collection of terms appropriate when sequencing samples obtained in an agri... | Extension |
Properties
- Range: SeqQualityCheckEnum
- Cardinality: 0..1
Examples
| Value |
|---|
| none |
Annotations
- Expected_value: none or manually edited
LinkML Source
name: seq_quality_check
annotations:
Expected_value:
tag: Expected_value
value: none or manually edited
description: Indicate if the sequence has been called by automatic systems (none)
or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms).
Applied only for sequences that are not submitted to SRA,ENA or DRA
title: sequence quality check
examples:
- value: none
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- quality
slot_uri: MIXS:0000051
alias: seq_quality_check
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: SeqQualityCheckEnum