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Term: sequencing method (seq_meth)

Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)

URI: MIXS:0000050

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use seq_meth.

Name Description Checklist/Extension
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MimarksC Minimal Information about a Marker Sequence: specimen Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
MimarksS Minimal Information about a Marker Sequence: survey Checklist
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
MimsMisip Metagenome or Environmental with SIP Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
Mims Metagenome or Environmental Checklist

Properties

  • Range: String

  • Cardinality: 1

  • Structured pattern: ^{text}|({termLabel} \[{termID}\])$

Examples

Value
454 Genome Sequencer FLX [OBI:0000702]

LinkML Source

name: seq_meth
description: Sequencing machine used. Where possible the term should be taken from
  the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
title: sequencing method
examples:
- value: 454 Genome Sequencer FLX [OBI:0000702]
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- method
slot_uri: MIXS:0000050
alias: seq_meth
domain_of:
- MimsMisip
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
structured_pattern:
  syntax: ^{text}|({termLabel} \[{termID}\])$
  interpolated: true
  partial_match: true