Term: adapters (adapters)

Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters

URI: MIXS:0000048

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use adapters.

Name	Description	Checklist/Extension
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
Mims	Metagenome or Environmental	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MimarksS	Minimal Information about a Marker Sequence: survey	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{adapter_A_DNA_sequence};{adapter_B_DNA_sequence}$

Examples

Value
AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT

LinkML Source

name: adapters
description: Adapters provide priming sequences for both amplification and sequencing
  of the sample-library fragments. Both adapters should be reported; in uppercase
  letters
title: adapters
examples:
- value: AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000048
alias: adapters
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
structured_pattern:
  syntax: ^{adapter_A_DNA_sequence};{adapter_B_DNA_sequence}$
  interpolated: true
  partial_match: true