Term: multiplex identifiers (mid)

Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters

URI: MIXS:0000047

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use mid.

Name	Description	Checklist/Extension
Mims	Metagenome or Environmental	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MimarksS	Minimal Information about a Marker Sequence: survey	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{ambiguous_nucleotides}$

• Regex pattern: ^[ACGTRKSYMWBHDVN]+$

Examples

Value
GTGAATAT

LinkML Source

name: mid
description: Molecular barcodes, called Multiplex Identifiers (MIDs), that are used
  to specifically tag unique samples in a sequencing run. Sequence should be reported
  in uppercase letters
title: multiplex identifiers
examples:
- value: GTGAATAT
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- identifier
slot_uri: MIXS:0000047
alias: mid
domain_of:
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
pattern: ^[ACGTRKSYMWBHDVN]+$
structured_pattern:
  syntax: ^{ambiguous_nucleotides}$
  interpolated: true
  partial_match: true