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Term: nucleic acid amplification (nucl_acid_amp)

A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids

URI: MIXS:0000038

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use nucl_acid_amp.

Name Description Checklist/Extension
MigsVi Minimal Information about a Genome Sequence: virus Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
MimarksS Minimal Information about a Marker Sequence: survey Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
Mims Metagenome or Environmental Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MimarksC Minimal Information about a Marker Sequence: specimen Checklist
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension

Properties

  • Range: String

  • Cardinality: 0..1

  • Structured pattern: ^{PMID}|{DOI}|{URL}$

  • Regex pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$

Examples

Value
https://phylogenomics.me/protocols/16s-pcr-protocol/

LinkML Source

name: nucl_acid_amp
description: A link to a literature reference, electronic resource or a standard operating
  procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of
  specific nucleic acids
title: nucleic acid amplification
examples:
- value: https://phylogenomics.me/protocols/16s-pcr-protocol/
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000038
alias: nucl_acid_amp
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
structured_pattern:
  syntax: ^{PMID}|{DOI}|{URL}$
  interpolated: true
  partial_match: true