Term: source material identifiers (source_mat_id)

A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)

URI: MIXS:0000026

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use source_mat_id.

Name	Description	Checklist/Extension
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
SymbiontAssociated	A collection of terms appropriate when collecting samples and sequencing samp...	Extension
Mims	Metagenome or Environmental	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MimarksC	Minimal Information about a Marker Sequence: specimen	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MimarksS	Minimal Information about a Marker Sequence: survey	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

• Range: String
• Cardinality: *

Examples

Value
MPI012345

Annotations

• Expected_value: for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer

LinkML Source

name: source_mat_id
annotations:
  Expected_value:
    tag: Expected_value
    value: 'for cultures of microorganisms: identifiers for two culture collections;
      for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID,
  and as opposed to a particular digital record of a material sample) used for extracting
  nucleic acids, and subsequent sequencing. The identifier can refer either to the
  original material collected or to any derived sub-samples. The INSDC qualifiers
  /specimen_voucher, /bio_material, or /culture_collection may or may not share the
  same value as the source_mat_id field. For instance, the /specimen_voucher qualifier
  and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen
  voucher and sampled tissue with the same identifier. However, the /culture_collection
  qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
  would refer to an identifier from some derived culture from which the nucleic acids
  were extracted (e.g. xatc123 or ark:/2154/R2)
title: source material identifiers
examples:
- value: MPI012345
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- identifier
- material
- source
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- SymbiontAssociated
range: string
multivalued: true