Term: subspecific genetic lineage (subspecf_gen_lin)

Information about the genetic distinctness of the sequenced organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123

URI: MIXS:0000020

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use subspecf_gen_lin.

Name	Description	Checklist/Extension
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MimarksC	Minimal Information about a Marker Sequence: specimen	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
FoodFoodProductionFacility	A collection of terms appropriate when collecting samples and performing sequ...	Extension

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
serovar:Newport

Annotations

• Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar

LinkML Source

name: subspecf_gen_lin
annotations:
  Expected_value:
    tag: Expected_value
    value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
      e.g. serovar, biotype, ecotype, variety, cultivar
description: Information about the genetic distinctness of the sequenced organism
  below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant
  genetic typing schemes like Group I plasmid. Subspecies should not be recorded in
  this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage
  rank separated by a colon, e.g., biovar:abc123
title: subspecific genetic lineage
examples:
- value: serovar:Newport
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- lineage
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0000020
alias: subspecf_gen_lin
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
- FoodFoodProductionFacility
range: string