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Term: depth (depth)

The vertical distance below local surface. For sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples

URI: MIXS:0000018

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use depth.

Name Description Checklist/Extension
PlantAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
MicrobialMatBiofilm A collection of terms appropriate when collecting samples and sequencing samp... Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
Water A collection of terms appropriate when collecting samples and sequencing wate... Extension
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
HostAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
Misag Minimum Information About a Single Amplified Genome Checklist
Sediment A collection of terms appropriate when collecting samples and sequencing samp... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
Mims Metagenome or Environmental Checklist
MiscellaneousNaturalOrArtificialEnvironment A collection of generic terms appropriate when collecting and sequencing samp... Extension
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MimarksC Minimal Information about a Marker Sequence: specimen Checklist
Soil A collection of terms appropriate when collecting samples and sequencing samp... Extension
WastewaterSludge A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimarksS Minimal Information about a Marker Sequence: survey Checklist

Properties

  • Range: String

  • Cardinality: 0..1

  • Structured pattern: ^{scientific_float}( *- *{scientific_float})? *{text}$

  • Regex pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Annotations

  • Preferred_unit: meter

LinkML Source

name: depth
annotations:
  Preferred_unit:
    tag: Preferred_unit
    value: meter
description: The vertical distance below local surface. For sediment or soil samples
  depth is measured from sediment or soil surface, respectively. Depth can be reported
  as an interval for subsurface samples
title: depth
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- depth
slot_uri: MIXS:0000018
alias: depth
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
  *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
  interpolated: true
  partial_match: true