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Term: geographic location (country and/or sea,region) (geo_loc_name)

The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)

URI: MIXS:0000010

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use geo_loc_name.

Name Description Checklist/Extension
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
Mims Metagenome or Environmental Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MimarksC Minimal Information about a Marker Sequence: specimen Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
MimarksS Minimal Information about a Marker Sequence: survey Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension

Properties

  • Range: String

  • Cardinality: 1

  • Structured pattern: ^{text}: {text}, {text}$

  • Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
USA: Maryland, Bethesda

LinkML Source

name: geo_loc_name
description: The geographical origin of the sample as defined by the country or sea
  name followed by specific region name. Country or sea names should be chosen from
  the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- geographic
- location
slot_uri: MIXS:0000010
alias: geo_loc_name
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- SymbiontAssociated
range: string
required: true
pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
structured_pattern:
  syntax: '^{text}: {text}, {text}$'
  interpolated: true
  partial_match: true