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Term: experimental factor (experimental_factor)

Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)

URI: MIXS:0000008

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use experimental_factor.

Name Description Checklist/Extension
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
Mims Metagenome or Environmental Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MimarksC Minimal Information about a Marker Sequence: specimen Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
MimarksS Minimal Information about a Marker Sequence: survey Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension

Properties

  • Range: String

  • Cardinality: *

  • Regex pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$

Examples

Value
time series design [EFO:0001779]

Annotations

  • Expected_value: text or EFO and/or OBI

LinkML Source

name: experimental_factor
annotations:
  Expected_value:
    tag: Expected_value
    value: text or EFO and/or OBI
description: Variable aspects of an experiment design that can be used to describe
  an experiment, or set of experiments, in an increasingly detailed manner. This field
  accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for
  Biomedical Investigations (OBI)
title: experimental factor
examples:
- value: time series design [EFO:0001779]
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- experimental
- factor
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000008
alias: experimental_factor
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
multivalued: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$