Term: sample collection device (samp_collect_device)
The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
URI: MIXS:0000002
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use samp_collect_device.
| Name | Description | Checklist/Extension |
|---|---|---|
| MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
| MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
| Mims | Metagenome or Environmental | Checklist |
| Misag | Minimum Information About a Single Amplified Genome | Checklist |
| MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
| MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
| MimarksC | Minimal Information about a Marker Sequence: specimen | Checklist |
| MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
| Agriculture | A collection of terms appropriate when sequencing samples obtained in an agri... | Extension |
| FoodFoodProductionFacility | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
| FoodAnimalAndAnimalFeed | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
| FoodFarmEnvironment | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
| Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
| MimarksS | Minimal Information about a Marker Sequence: survey | Checklist |
| Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
| FoodHumanFoods | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
Properties
- Range: String
- Cardinality: 0..1
Annotations
- Expected_value: device name
LinkML Source
name: samp_collect_device
annotations:
Expected_value:
tag: Expected_value
value: device name
description: The device used to collect an environmental sample. This field accepts
terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
title: sample collection device
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- device
- sample
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000002
alias: samp_collect_device
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string