Slot: taxonomic classification (tax_class)
Method used for taxonomic classification, along with reference database used, classification rank, and thresholds used to classify new genomes
URI: MIXS:0000064
Applicable Classes
| Name |
Description |
Modifies Slot |
| Mims |
Metagenome or Environmental |
no |
| MimsSoil |
MIxS Data that comply with the Mims checklist and the Soil Extension |
no |
Properties
Examples
| Value |
| vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, default parameters) |
Schema Source
- from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
Mappings
| Mapping Type |
Mapped Value |
| self |
MIXS:0000064 |
| native |
mixs_missing_value_sandbox:tax_class |
LinkML Source
name: tax_class
description: Method used for taxonomic classification, along with reference database
used, classification rank, and thresholds used to classify new genomes
title: taxonomic classification
examples:
- value: vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification,
default parameters)
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- classification
- taxon
slot_uri: MIXS:0000064
alias: tax_class
domain_of:
- Mims
range: string