Slot: source material identifiers (source_mat_id)
A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)
URI: MIXS:0000026
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Mims | Metagenome or Environmental | yes |
| MimsSoil | MIxS Data that comply with the Mims checklist and the Soil Extension | no |
Properties
-
Range: String
-
Multivalued: True
Examples
| Value |
|---|
| MPI012345 |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| Expected_value | for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer |
Schema Source
- from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0000026 |
| native | mixs_missing_value_sandbox:source_mat_id |
LinkML Source
name: source_mat_id
annotations:
Expected_value:
tag: Expected_value
value: 'for cultures of microorganisms: identifiers for two culture collections;
for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID,
and as opposed to a particular digital record of a material sample) used for extracting
nucleic acids, and subsequent sequencing. The identifier can refer either to the
original material collected or to any derived sub-samples. The INSDC qualifiers
/specimen_voucher, /bio_material, or /culture_collection may or may not share the
same value as the source_mat_id field. For instance, the /specimen_voucher qualifier
and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen
voucher and sampled tissue with the same identifier. However, the /culture_collection
qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
would refer to an identifier from some derived culture from which the nucleic acids
were extracted (e.g. xatc123 or ark:/2154/R2)
title: source material identifiers
examples:
- value: MPI012345
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- identifier
- material
- source
string_serialization: '{text}'
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- Mims
range: string
multivalued: true