Slot: similarity search method (sim_search_meth)

Tool used to compare ORFs with database, along with version and cutoffs used

Applicable Classes

Name	Description	Modifies Slot
Mims	Metagenome or Environmental	no
MimsSoil	MIxS Data that comply with the Mims checklist and the Soil Extension	no

Properties

Range: String
Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
HMMER3;3.1b2;hmmsearch, cutoff of 50 on score

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type	Mapped Value
self	MIXS:0000063
native	mixs_missing_value_sandbox:sim_search_meth

LinkML Source

name: sim_search_meth
description: Tool used to compare ORFs with database, along with version and cutoffs
  used
title: similarity search method
examples:
- value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- method
slot_uri: MIXS:0000063
alias: sim_search_meth
domain_of:
- Mims
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true