Slot: sequencing method (seq_meth)

Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)

URI: MIXS:0000050

Applicable Classes

Name	Description	Modifies Slot
Mims	Metagenome or Environmental	no
MimsSoil	MIxS Data that comply with the Mims checklist and the Soil Extension	no

Properties

• Range: String

• Required: True

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$

Examples

Value
454 Genome Sequencer FLX [OBI:0000702]

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type	Mapped Value
self	MIXS:0000050
native	mixs_missing_value_sandbox:seq_meth

LinkML Source

name: seq_meth
description: Sequencing machine used. Where possible the term should be taken from
  the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
title: sequencing method
examples:
- value: 454 Genome Sequencer FLX [OBI:0000702]
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- method
slot_uri: MIXS:0000050
alias: seq_meth
domain_of:
- Mims
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
structured_pattern:
  syntax: ^{text}|({termLabel} \[{termID}\])$
  interpolated: true
  partial_match: true