Slot: taxonomy ID of DNA sample (samp_taxon_id)

NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or 'blank sample' for negative controls

URI: MIXS:0001320

Applicable Classes

Name	Description	Modifies Slot
Mims	Metagenome or Environmental	no
MimsSoil	MIxS Data that comply with the Mims checklist and the Soil Extension	no

Properties

• Range: String

• Required: True

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$

Examples

Value
Gut Metagenome [NCBITaxon:749906]

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type	Mapped Value
self	MIXS:0001320
native	mixs_missing_value_sandbox:samp_taxon_id

LinkML Source

name: samp_taxon_id
description: NCBI taxon id of the sample.  Maybe be a single taxon or mixed taxa sample.
  Use 'synthetic metagenome  for mock community/positive controls, or 'blank sample'
  for negative controls
title: taxonomy ID of DNA sample
examples:
- value: Gut Metagenome [NCBITaxon:749906]
in_subset:
- investigation
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- dna
- identifier
- sample
- taxon
slot_uri: MIXS:0001320
alias: samp_taxon_id
domain_of:
- Mims
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$
structured_pattern:
  syntax: ^{text} \[{NCBItaxon_id}\]$
  interpolated: true
  partial_match: true