Slot: reference database(s) (ref_db)

List of database(s) used for ORF annotation, along with version number and reference to website or publication

Applicable Classes

Name	Description	Modifies Slot
Mims	Metagenome or Environmental	no
MimsSoil	MIxS Data that comply with the Mims checklist and the Soil Extension	no

Properties

Range: String

Examples

Value
pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 doi:10.1093/nar/gkw975

Identifier and Mapping Information

Annotations

property	value
Expected_value	names, versions, and references of databases

Schema Source

from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type	Mapped Value
self	MIXS:0000062
native	mixs_missing_value_sandbox:ref_db

LinkML Source

name: ref_db
annotations:
  Expected_value:
    tag: Expected_value
    value: names, versions, and references of databases
description: List of database(s) used for ORF annotation, along with version number
  and reference to website or publication
title: reference database(s)
examples:
- value: pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 doi:10.1093/nar/gkw975
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- database
string_serialization: '{database};{version};{reference}'
slot_uri: MIXS:0000062
alias: ref_db
domain_of:
- Mims
range: string