Slot: geographic location (country and/or sea,region) (geo_loc_name)

The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)

URI: MIXS:0000010

Applicable Classes

Name	Description	Modifies Slot
Mims	Metagenome or Environmental	no
MimsSoil	MIxS Data that comply with the Mims checklist and the Soil Extension	no

Properties

• Range: String

• Required: True

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
USA: Maryland, Bethesda

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type	Mapped Value
self	MIXS:0000010
native	mixs_missing_value_sandbox:geo_loc_name

LinkML Source

name: geo_loc_name
description: The geographical origin of the sample as defined by the country or sea
  name followed by specific region name. Country or sea names should be chosen from
  the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
in_subset:
- environment
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- geographic
- location
slot_uri: MIXS:0000010
alias: geo_loc_name
domain_of:
- Mims
range: string
required: true
pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
structured_pattern:
  syntax: '^{text}: {text}, {text}$'
  interpolated: true
  partial_match: true