Slot: feature prediction (feat_pred)

Method used to predict UViGs features such as ORFs, integration site, etc

URI: MIXS:0000061

Applicable Classes

Name	Description	Modifies Slot
Mims	Metagenome or Environmental	no
MimsSoil	MIxS Data that comply with the Mims checklist and the Soil Extension	no

Properties

• Range: String

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
Prodigal;2.6.3;default parameters

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type	Mapped Value
self	MIXS:0000061
native	mixs_missing_value_sandbox:feat_pred

LinkML Source

name: feat_pred
description: Method used to predict UViGs features such as ORFs, integration site,
  etc
title: feature prediction
examples:
- value: Prodigal;2.6.3;default parameters
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- feature
- predict
slot_uri: MIXS:0000061
alias: feat_pred
domain_of:
- Mims
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true