Slot: experimental factor (experimental_factor)
Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)
URI: MIXS:0000008
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Mims | Metagenome or Environmental | yes |
| MimsSoil | MIxS Data that comply with the Mims checklist and the Soil Extension | no |
Properties
-
Range: String
-
Multivalued: True
-
Regex pattern:
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
Examples
| Value |
|---|
| time series design [EFO:0001779] |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| Expected_value | text or EFO and/or OBI |
Schema Source
- from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0000008 |
| native | mixs_missing_value_sandbox:experimental_factor |
LinkML Source
name: experimental_factor
annotations:
Expected_value:
tag: Expected_value
value: text or EFO and/or OBI
description: Variable aspects of an experiment design that can be used to describe
an experiment, or set of experiments, in an increasingly detailed manner. This field
accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for
Biomedical Investigations (OBI)
title: experimental factor
examples:
- value: time series design [EFO:0001779]
in_subset:
- investigation
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- experimental
- factor
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000008
alias: experimental_factor
domain_of:
- Mims
range: string
multivalued: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$