Slot: local environmental context (env_local_scale)
Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
URI: MIXS:0000013
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Mims | Metagenome or Environmental | no |
| MimsSoil | MIxS Data that comply with the Mims checklist and the Soil Extension | no |
Properties
-
Range: String
-
Required: True
Examples
| Value |
|---|
| hillside [ENVO:01000333] |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| Expected_value | Environmental entities having causal influences upon the entity at time of sampling |
Schema Source
- from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0000013 |
| native | mixs_missing_value_sandbox:env_local_scale |
LinkML Source
name: env_local_scale
annotations:
Expected_value:
tag: Expected_value
value: Environmental entities having causal influences upon the entity at time
of sampling
description: 'Report the entity or entities which are in the sample or specimen s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial grain
than your entry for env_broad_scale. Terms, such as anatomical sites, from other
OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in
this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: local environmental context
examples:
- value: hillside [ENVO:01000333]
in_subset:
- environment
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- context
- environmental
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0000013
alias: env_local_scale
domain_of:
- Mims
range: string
required: true