Slot: assembly software (assembly_software)
Tool(s) used for assembly, including version number and parameters
URI: MIXS:0000058
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Mims | Metagenome or Environmental | yes |
| MimsSoil | MIxS Data that comply with the Mims checklist and the Soil Extension | no |
Properties
-
Range: String
-
Regex pattern:
^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
Examples
| Value |
|---|
| metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0000058 |
| native | mixs_missing_value_sandbox:assembly_software |
LinkML Source
name: assembly_software
description: Tool(s) used for assembly, including version number and parameters
title: assembly software
examples:
- value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
keywords:
- software
slot_uri: MIXS:0000058
alias: assembly_software
domain_of:
- Mims
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{software};{version};{parameters}$
interpolated: true
partial_match: true