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Slot: annotation (annot)

Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter

URI: MIXS:0000059

Applicable Classes

Name Description Modifies Slot
Mims Metagenome or Environmental yes
MimsSoil MIxS Data that comply with the Mims checklist and the Soil Extension no

Properties

Examples

Value
prokka

Identifier and Mapping Information

Annotations

property value
Expected_value name of tool or pipeline used, or annotation source description

Schema Source

  • from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox

Mappings

Mapping Type Mapped Value
self MIXS:0000059
native mixs_missing_value_sandbox:annot

LinkML Source

name: annot
annotations:
  Expected_value:
    tag: Expected_value
    value: name of tool or pipeline used, or annotation source description
description: Tool used for annotation, or for cases where annotation was provided
  by a community jamboree or model organism database rather than by a specific submitter
title: annotation
examples:
- value: prokka
in_subset:
- sequencing
from_schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
rank: 1000
string_serialization: '{text}'
slot_uri: MIXS:0000059
alias: annot
domain_of:
- Mims
range: string