Subset: Sequencing
URI: Sequencing
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/GenomicsStandardsConsortium/mixs-missing-value-sandbox
Slots in subset
| Slot | Description |
|---|---|
| adapters | Adapters provide priming sequences for both amplification and sequencing of t... |
| annot | Tool used for annotation, or for cases where annotation was provided by a com... |
| assembly_name | Name/version of the assembly provided by the submitter that is used in the ge... |
| assembly_qual | The assembly quality category is based on sets of criteria outlined for each ... |
| assembly_software | Tool(s) used for assembly, including version number and parameters |
| associated_resource | A related resource that is referenced, cited, or otherwise associated to the ... |
| feat_pred | Method used to predict UViGs features such as ORFs, integration site, etc |
| lib_layout | Specify whether to expect single, paired, or other configuration of reads |
| lib_reads_seqd | Total number of clones sequenced from the library |
| lib_screen | Specific enrichment or screening methods applied before and/or after creating... |
| lib_size | Total number of clones in the library prepared for the project |
| lib_vector | Cloning vector type(s) used in construction of libraries |
| mid | Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to spe... |
| nucl_acid_amp | A link to a literature reference, electronic resource or a standard operating... |
| nucl_acid_ext | A link to a literature reference, electronic resource or a standard operating... |
| number_contig | Total number of contigs in the cleaned/submitted assembly that makes up a giv... |
| ref_db | List of database(s) used for ORF annotation, along with version number and re... |
| seq_meth | Sequencing machine used |
| sim_search_meth | Tool used to compare ORFs with database, along with version and cutoffs used |
| sop | Standard operating procedures used in assembly and/or annotation of genomes, ... |
| tax_class | Method used for taxonomic classification, along with reference database used,... |