Term: seq_meth

Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)

URI: MIXS:0000050

Properties

• Range: String

• Required: True

• Structured pattern: ^{text}|({termLabel} \[{termID}\])$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$

Examples

Value
454 Genome Sequencer FLX [OBI:0000702]

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/mixs-6-2-rc

LinkML Source

name: seq_meth
description: Sequencing machine used. Where possible the term should be taken from
  the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
title: sequencing method
examples:
- value: 454 Genome Sequencer FLX [OBI:0000702]
in_subset:
- sequencing
from_schema: https://w3id.org/mixs-6-2-rc
keywords:
- method
slot_uri: MIXS:0000050
multivalued: false
alias: seq_meth
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
structured_pattern:
  syntax: ^{text}|({termLabel} \[{termID}\])$
  interpolated: true
  partial_match: true