Term: chimera_check

Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences

URI: MIXS:0000052

Properties

• Range: String

• Structured pattern: ^{software};{version};{parameters}$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
uchime;v4.1;default parameters

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/mixs-6-2-rc

LinkML Source

name: chimera_check
description: Tool(s) used for chimera checking, including version number and parameters,
  to discover and remove chimeric sequences. A chimeric sequence is comprised of two
  or more phylogenetically distinct parent sequences
title: chimera check software
examples:
- value: uchime;v4.1;default parameters
in_subset:
- sequencing
from_schema: https://w3id.org/mixs-6-2-rc
keywords:
- software
slot_uri: MIXS:0000052
multivalued: false
alias: chimera_check
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true