Combination: MiuvigHydrocarbonResourcesFluidsSwabs

MIxS data that complies with the Miuvig checklist and the HydrocarbonResourcesFluidsSwabs Extension

Inheritance

• Extension
  • HydrocarbonResourcesFluidsSwabs
    • MiuvigHydrocarbonResourcesFluidsSwabs [ Miuvig]

Terms

Name	Cardinality and Range	Description	Inheritance
samp_name	1..1 String	A local identifier or name that for the material sample used for extracting n...	Miuvig, HydrocarbonResourcesFluidsSwabs
size_frac	0..1 recommended String	Filtering pore size used in sample preparation	Miuvig
lib_screen	0..1 recommended String	Specific enrichment or screening methods applied before and/or after creating...	Miuvig
source_uvig	1..1 String	Type of dataset from which the UViG was obtained	Miuvig
ref_db	0..1 recommended String	List of database(s) used for ORF annotation, along with version number and re...	Miuvig
nucl_acid_amp	0..1 recommended String	A link to a literature reference, electronic resource or a standard operating...	Miuvig
lib_size	0..1 recommended Integer	Total number of clones in the library prepared for the project	Miuvig
mid	0..1 recommended String	Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to spe...	Miuvig
assembly_name	0..1 recommended String	Name/version of the assembly provided by the submitter that is used in the ge...	Miuvig
temp	1..1 recommended String	Temperature of the sample at the time of sampling	Miuvig, HydrocarbonResourcesFluidsSwabs
compl_score	0..1 recommended String	Completeness score is typically based on either the fraction of markers found...	Miuvig
trnas	0..1 String	The total number of tRNAs identified from the SAG or MAG	Miuvig
nucl_acid_ext	0..1 recommended String	A link to a literature reference, electronic resource or a standard operating...	Miuvig
samp_size	0..1 recommended String	The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll...	Miuvig
alt	0..1 recommended String	Heights of objects such as airplanes, space shuttles, rockets, atmospheric ba...	Miuvig
estimated_size	0..1 String	The estimated size of the genome prior to sequencing	Miuvig
source_mat_id	0..* recommended String	A unique identifier assigned to a material sample (as defined by http://rs	Miuvig
samp_vol_we_dna_ext	0..1 String	Volume (ml) or mass (g) of total collected sample processed for DNA extractio...	Miuvig, HydrocarbonResourcesFluidsSwabs
pathogenicity	0..1 String	To what is the entity pathogenic	Miuvig
lib_reads_seqd	0..1 recommended Integer	Total number of clones sequenced from the library	Miuvig
samp_collect_device	0..1 recommended String	The device used to collect an environmental sample	Miuvig
number_contig	1..1 Integer	Total number of contigs in the cleaned/submitted assembly that makes up a giv...	Miuvig
biotic_relationship	0..1 BIOTICRELATIONSHIPENUM	Description of relationship(s) between the subject organism and other organis...	Miuvig
trna_ext_software	0..1 String	Tools used for tRNA identification	Miuvig
lib_layout	0..1 recommended LIBLAYOUTENUM	Specify whether to expect single, paired, or other configuration of reads	Miuvig
assembly_qual	1..1 String	The assembly quality category is based on sets of criteria outlined for each ...	Miuvig
ref_biomaterial	0..1 String	Primary publication if isolated before genome publication; otherwise, primary...	Miuvig
project_name	1..1 String	Name of the project within which the sequencing was organized	Miuvig, HydrocarbonResourcesFluidsSwabs
lib_vector	0..1 recommended String	Cloning vector type(s) used in construction of libraries	Miuvig
host_spec_range	0..* String	The range and diversity of host species that an organism is capable of infect...	Miuvig
neg_cont_type	0..1 recommended NEGCONTTYPEENUM	The substance or equipment used as a negative control in an investigation	Miuvig
virus_enrich_appr	1..1 VIRUSENRICHAPPRENUM	List of approaches used to enrich the sample for viruses, if any	Miuvig
adapters	0..1 recommended String	Adapters provide priming sequences for both amplification and sequencing of t...	Miuvig
assembly_software	1..1 String	Tool(s) used for assembly, including version number and parameters	Miuvig
tax_ident	0..1 TAXIDENTENUM	The phylogenetic marker(s) used to assign an organism name to the SAG or MAG	Miuvig
annot	0..1 String	Tool used for annotation, or for cases where annotation was provided by a com...	Miuvig
pos_cont_type	0..1 recommended String	The substance, mixture, product, or apparatus used to verify that a process w...	Miuvig
feat_pred	0..1 recommended String	Method used to predict UViGs features such as ORFs, integration site, etc	Miuvig
compl_software	0..1 String	Tools used for completion estimate, i	Miuvig
env_local_scale	1..1 String	Report the entity or entities which are in the sample or specimen s local vic...	Miuvig
samp_mat_process	0..1 recommended String	A brief description of any processing applied to the sample during or after r...	Miuvig
sim_search_meth	0..1 recommended String	Tool used to compare ORFs with database, along with version and cutoffs used	Miuvig
host_disease_stat	0..1 recommended String	List of diseases with which the host has been diagnosed; can include multiple...	Miuvig
depth	0..1 recommended String	The vertical distance below local surface	Miuvig
samp_collect_method	0..1 recommended String	The method employed for collecting the sample	Miuvig
compl_appr	0..1 recommended COMPLAPPRENUM	The approach used to determine the completeness of a given genomic assembly, ...	Miuvig
specific_host	0..1 String	Report the host's taxonomic name and/or NCBI taxonomy ID	Miuvig
env_medium	1..1 String	Report the environmental material(s) immediately surrounding the sample or sp...	Miuvig
samp_taxon_id	1..1 String	NCBI taxon id of the sample	Miuvig
geo_loc_name	1..1 String	The geographical origin of the sample as defined by the country or sea name f...	Miuvig
collection_date	1..1 Datetime	The time of sampling, either as an instance (single point in time) or interva...	Miuvig
seq_meth	1..1 String	Sequencing machine used	Miuvig
lat_lon	1..1 String	The geographical origin of the sample as defined by latitude and longitude	Miuvig
elev	0..1 recommended String	Elevation of the sampling site is its height above a fixed reference point, m...	Miuvig
env_broad_scale	1..1 String	Report the major environmental system the sample or specimen came from	Miuvig
tax_class	0..1 recommended String	Method used for taxonomic classification, along with reference database used,...	Miuvig
experimental_factor	0..* recommended String	Variable aspects of an experiment design that can be used to describe an expe...	Miuvig
sort_tech	0..1 recommended SORTTECHENUM	Method used to sort/isolate cells or particles of interest	Miuvig
sc_lysis_approach	0..1 recommended SCLYSISAPPROACHENUM	Method used to free DNA from interior of the cell(s) or particle(s)	Miuvig
sc_lysis_method	0..1 recommended String	Name of the kit or standard protocol used for cell(s) or particle(s) lysis	Miuvig
wga_amp_appr	0..1 recommended WGAAMPAPPRENUM	Method used to amplify genomic DNA in preparation for sequencing	Miuvig
wga_amp_kit	0..1 recommended String	Kit used to amplify genomic DNA in preparation for sequencing	Miuvig
bin_param	0..1 recommended BINPARAMENUM	The parameters that have been applied during the extraction of genomes from m...	Miuvig
bin_software	0..1 recommended String	Tool(s) used for the extraction of genomes from metagenomic datasets, where p...	Miuvig
reassembly_bin	0..1 recommended Boolean	Has an assembly been performed on a genome bin extracted from a metagenomic a...	Miuvig
mag_cov_software	0..1 MAGCOVSOFTWAREENUM	Tool(s) used to determine the genome coverage if coverage is used as a binnin...	Miuvig
vir_ident_software	1..1 String	Tool(s) used for the identification of UViG as a viral genome, software or pr...	Miuvig
pred_genome_type	1..1 String	Type of genome predicted for the UViG	Miuvig
pred_genome_struc	1..1 PREDGENOMESTRUCENUM	Expected structure of the viral genome	Miuvig
detec_type	1..1 String	Type of UViG detection	Miuvig
otu_class_appr	0..1 recommended String	Cutoffs and approach used when clustering species-level OTUs	Miuvig
otu_seq_comp_appr	0..1 recommended String	Tool and thresholds used to compare sequences when computing "species-level" ...	Miuvig
otu_db	0..1 recommended String	Reference database (i	Miuvig
host_pred_appr	0..1 recommended HOSTPREDAPPRENUM	Tool or approach used for host prediction	Miuvig
host_pred_est_acc	0..1 recommended String	For each tool or approach used for host prediction, estimated false discovery...	Miuvig
associated_resource	0..* recommended String	A related resource that is referenced, cited, or otherwise associated to the ...	Miuvig
sop	0..* recommended String	Standard operating procedures used in assembly and/or annotation of genomes, ...	Miuvig
hcr	1..1 HCRENUM	Main Hydrocarbon Resource type	HydrocarbonResourcesFluidsSwabs
hc_produced	1..1 HCPRODUCEDENUM	Main hydrocarbon type produced from resource (i	HydrocarbonResourcesFluidsSwabs
basin	1..1 String	Name of the basin (e	HydrocarbonResourcesFluidsSwabs
field	0..1 recommended String	Name of the hydrocarbon field (e	HydrocarbonResourcesFluidsSwabs
reservoir	0..1 recommended String	Name of the reservoir (e	HydrocarbonResourcesFluidsSwabs
hcr_temp	0..1 recommended String	Original temperature of the hydrocarbon resource	HydrocarbonResourcesFluidsSwabs
tvdss_of_hcr_temp	0..1 String	True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig...	HydrocarbonResourcesFluidsSwabs
hcr_pressure	0..1 String	Original pressure of the hydrocarbon resource	HydrocarbonResourcesFluidsSwabs
tvdss_of_hcr_press	0..1 String	True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig...	HydrocarbonResourcesFluidsSwabs
lithology	0..1 recommended LITHOLOGYENUM	Hydrocarbon resource main lithology (Additional information: http://petrowiki	HydrocarbonResourcesFluidsSwabs
depos_env	0..1 recommended DEPOSENVENUM	Main depositional environment (https://en	HydrocarbonResourcesFluidsSwabs
hcr_geol_age	0..1 recommended SHAREDENUM5	Geological age of hydrocarbon resource (Additional info: https://en	HydrocarbonResourcesFluidsSwabs
hcr_fw_salinity	0..1 recommended String	Original formation water salinity (prior to secondary recovery e	HydrocarbonResourcesFluidsSwabs
sulfate_fw	0..1 recommended String	Original sulfate concentration in the hydrocarbon resource	HydrocarbonResourcesFluidsSwabs
vfa_fw	0..1 recommended String	Original volatile fatty acid concentration in the hydrocarbon resource	HydrocarbonResourcesFluidsSwabs
prod_start_date	0..1 recommended Datetime	Date of field's first production	HydrocarbonResourcesFluidsSwabs
prod_rate	0..1 recommended String	Oil and/or gas production rates per well (e	HydrocarbonResourcesFluidsSwabs
water_prod_rate	0..1 recommended String	Water production rates per well (e	HydrocarbonResourcesFluidsSwabs
water_cut	1..1 String	Current amount of water (%) in a produced fluid stream; or the average of the...	HydrocarbonResourcesFluidsSwabs
iwf	1..1 Float	Proportion of the produced fluids derived from injected water at the time of ...	HydrocarbonResourcesFluidsSwabs
add_recov_method	1..1 String	Additional (i	HydrocarbonResourcesFluidsSwabs
iw_bt_date_well	0..1 Datetime	Injection water breakthrough date per well following a secondary and/or terti...	HydrocarbonResourcesFluidsSwabs
biocide	0..1 recommended String	List of biocides (commercial name of product and supplier) and date of admini...	HydrocarbonResourcesFluidsSwabs
biocide_admin_method	0..1 recommended String	Method of biocide administration (dose, frequency, duration, time elapsed bet...	HydrocarbonResourcesFluidsSwabs
chem_treatment	0..1 String	List of chemical compounds administered upstream the sampling location where ...	HydrocarbonResourcesFluidsSwabs
chem_treat_method	0..1 String	Method of chemical administration(dose, frequency, duration, time elapsed bet...	HydrocarbonResourcesFluidsSwabs
samp_loc_corr_rate	0..1 recommended String	Metal corrosion rate is the speed of metal deterioration due to environmental...	HydrocarbonResourcesFluidsSwabs
samp_well_name	0..1 recommended String	Name of the well (e	HydrocarbonResourcesFluidsSwabs
win	0..1 recommended String	A unique identifier of a well or wellbore	HydrocarbonResourcesFluidsSwabs
samp_type	1..1 String	The type of material from which the sample was obtained	HydrocarbonResourcesFluidsSwabs
samp_subtype	0..1 recommended SAMPSUBTYPEENUM	Name of sample sub-type	HydrocarbonResourcesFluidsSwabs
samp_collect_point	1..1 SAMPCOLLECTPOINTENUM	Sampling point on the asset were sample was collected (e	HydrocarbonResourcesFluidsSwabs
pressure	0..1 String	Pressure to which the sample is subject to, in atmospheres	HydrocarbonResourcesFluidsSwabs
oxy_stat_samp	0..1 OXYSTATSAMPENUM	Oxygenation status of sample	HydrocarbonResourcesFluidsSwabs
samp_preserv	0..1 String	Preservative added to the sample (e	HydrocarbonResourcesFluidsSwabs
samp_transport_cond	0..1 String	Sample transport duration (in days or hrs) and temperature the sample was exp...	HydrocarbonResourcesFluidsSwabs
samp_store_temp	0..1 String	Temperature at which sample was stored, e	HydrocarbonResourcesFluidsSwabs
samp_store_dur	0..1 String	Duration for which the sample was stored	HydrocarbonResourcesFluidsSwabs
samp_store_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room	HydrocarbonResourcesFluidsSwabs
organism_count	0..* recommended String	Total cell count of any organism (or group of organisms) per gram, volume or ...	HydrocarbonResourcesFluidsSwabs
org_count_qpcr_info	0..1 String	If qpcr was used for the cell count, the target gene name, the primer sequenc...	HydrocarbonResourcesFluidsSwabs
ph	0..1 recommended Float	Ph measurement of the sample, or liquid portion of sample, or aqueous phase o...	HydrocarbonResourcesFluidsSwabs
salinity	0..1 String	The total concentration of all dissolved salts in a liquid or solid sample	HydrocarbonResourcesFluidsSwabs
alkalinity	0..1 String	Alkalinity, the ability of a solution to neutralize acids to the equivalence ...	HydrocarbonResourcesFluidsSwabs
alkalinity_method	0..1 String	Method used for alkalinity measurement	HydrocarbonResourcesFluidsSwabs
sulfate	1..1 String	Concentration of sulfate in the sample	HydrocarbonResourcesFluidsSwabs
sulfide	1..1 String	Concentration of sulfide in the sample	HydrocarbonResourcesFluidsSwabs
tot_sulfur	0..1 recommended String	Concentration of total sulfur in the sample	HydrocarbonResourcesFluidsSwabs
nitrate	1..1 String	Concentration of nitrate in the sample	HydrocarbonResourcesFluidsSwabs
nitrite	0..1 recommended String	Concentration of nitrite in the sample	HydrocarbonResourcesFluidsSwabs
ammonium	0..1 recommended String	Concentration of ammonium in the sample	HydrocarbonResourcesFluidsSwabs
tot_nitro	0..1 String	Total nitrogen concentration of water samples, calculated by: total nitrogen ...	HydrocarbonResourcesFluidsSwabs
diss_iron	0..1 recommended String	Concentration of dissolved iron in the sample	HydrocarbonResourcesFluidsSwabs
sodium	0..1 String	Sodium concentration in the sample	HydrocarbonResourcesFluidsSwabs
chloride	0..1 String	Concentration of chloride in the sample	HydrocarbonResourcesFluidsSwabs
potassium	0..1 String	Concentration of potassium in the sample	HydrocarbonResourcesFluidsSwabs
magnesium	0..1 String	Concentration of magnesium in the sample	HydrocarbonResourcesFluidsSwabs
calcium	0..1 String	Concentration of calcium in the sample	HydrocarbonResourcesFluidsSwabs
tot_iron	0..1 recommended String	Concentration of total iron in the sample	HydrocarbonResourcesFluidsSwabs
diss_org_carb	0..1 String	Concentration of dissolved organic carbon in the sample, liquid portion of th...	HydrocarbonResourcesFluidsSwabs
diss_inorg_carb	0..1 String	Dissolved inorganic carbon concentration in the sample, typically measured af...	HydrocarbonResourcesFluidsSwabs
diss_inorg_phosp	0..1 recommended String	Concentration of dissolved inorganic phosphorus in the sample	HydrocarbonResourcesFluidsSwabs
tot_phosp	0..1 String	Total phosphorus concentration in the sample, calculated by: total phosphorus...	HydrocarbonResourcesFluidsSwabs
suspend_solids	0..* String	Concentration of substances including a wide variety of material, such as sil...	HydrocarbonResourcesFluidsSwabs
density	0..1 String	Density of the sample, which is its mass per unit volume (aka volumetric mass...	HydrocarbonResourcesFluidsSwabs
diss_carb_dioxide	0..1 String	Concentration of dissolved carbon dioxide in the sample or liquid portion of ...	HydrocarbonResourcesFluidsSwabs
diss_oxygen_fluid	0..1 String	Concentration of dissolved oxygen in the oil field produced fluids as it cont...	HydrocarbonResourcesFluidsSwabs
vfa	0..1 recommended String	Concentration of Volatile Fatty Acids in the sample	HydrocarbonResourcesFluidsSwabs
benzene	0..1 recommended String	Concentration of benzene in the sample	HydrocarbonResourcesFluidsSwabs
toluene	0..1 recommended String	Concentration of toluene in the sample	HydrocarbonResourcesFluidsSwabs
ethylbenzene	0..1 recommended String	Concentration of ethylbenzene in the sample	HydrocarbonResourcesFluidsSwabs
xylene	0..1 recommended String	Concentration of xylene in the sample	HydrocarbonResourcesFluidsSwabs
api	1..1 String	API gravity is a measure of how heavy or light a petroleum liquid is compared...	HydrocarbonResourcesFluidsSwabs
tan	0..1 recommended String	Total Acid Number (TAN) is a measurement of acidity that is determined by th...	HydrocarbonResourcesFluidsSwabs
viscosity	0..1 String	A measure of oil's resistance to gradual deformation by shear stress or t...	HydrocarbonResourcesFluidsSwabs
pour_point	0..1 String	Temperature at which a liquid becomes semi solid and loses its flow character...	HydrocarbonResourcesFluidsSwabs
saturates_pc	0..1 recommended String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResourcesFluidsSwabs
aromatics_pc	0..1 recommended String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResourcesFluidsSwabs
resins_pc	0..1 recommended String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResourcesFluidsSwabs
asphaltenes_pc	0..1 recommended String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResourcesFluidsSwabs
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	HydrocarbonResourcesFluidsSwabs
additional_info	0..1 String	Information that doesn't fit anywhere else	HydrocarbonResourcesFluidsSwabs

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/mixs-6-2-rc

LinkML Source

Direct

name: MiuvigHydrocarbonResourcesFluidsSwabs
description: MIxS data that complies with the Miuvig checklist and the HydrocarbonResourcesFluidsSwabs
  Extension
title: Miuvig combined with HydrocarbonResourcesFluidsSwabs
in_subset:
- combination_classes
from_schema: https://w3id.org/mixs-6-2-rc
is_a: HydrocarbonResourcesFluidsSwabs
mixins:
- Miuvig
class_uri: MIXS:0010012_0016016

Induced

name: MiuvigHydrocarbonResourcesFluidsSwabs
description: MIxS data that complies with the Miuvig checklist and the HydrocarbonResourcesFluidsSwabs
  Extension
title: Miuvig combined with HydrocarbonResourcesFluidsSwabs
in_subset:
- combination_classes
from_schema: https://w3id.org/mixs-6-2-rc
is_a: HydrocarbonResourcesFluidsSwabs
mixins:
- Miuvig
attributes:
  samp_name:
    name: samp_name
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: ''
    description: A local identifier or name that for the material sample used for
      extracting nucleic acids, and subsequent sequencing. It can refer either to
      the original material collected or to any derived sub-samples. It can have any
      format, but we suggest that you make it concise, unique and consistent within
      your lab, and as informative as possible. INSDC requires every sample name from
      a single Submitter to be unique. Use of a globally unique identifier for the
      field source_mat_id is recommended in addition to sample_name
    title: sample name
    examples:
    - value: ISDsoil1
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    slot_uri: MIXS:0001107
    multivalued: false
    alias: samp_name
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
  size_frac:
    name: size_frac
    description: Filtering pore size used in sample preparation
    title: size fraction selected
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{float}-{float} {unit}'
    slot_uri: MIXS:0000017
    multivalued: false
    alias: size_frac
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  lib_screen:
    name: lib_screen
    description: Specific enrichment or screening methods applied before and/or after
      creating libraries
    title: library screening strategy
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000043
    multivalued: false
    alias: lib_screen
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  source_uvig:
    name: source_uvig
    description: Type of dataset from which the UViG was obtained
    title: source of UViGs
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '[metagenome (not viral targeted)|viral fraction metagenome
      (virome)|sequence-targeted metagenome|metatranscriptome (not viral targeted)|viral
      fraction RNA metagenome (RNA virome)|sequence-targeted RNA metagenome|microbial
      single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate microbial
      genome|other]'
    slot_uri: MIXS:0000035
    multivalued: false
    alias: source_uvig
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    required: true
  ref_db:
    name: ref_db
    description: List of database(s) used for ORF annotation, along with version number
      and reference to website or publication
    title: reference database(s)
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{database};{version};{reference}'
    slot_uri: MIXS:0000062
    multivalued: false
    alias: ref_db
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the enzymatic amplification (PCR,
      TMA, NASBA) of specific nucleic acids
    title: nucleic acid amplification
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000038
    multivalued: false
    alias: nucl_acid_amp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  lib_size:
    name: lib_size
    description: Total number of clones in the library prepared for the project
    title: library size
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000039
    multivalued: false
    alias: lib_size
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: integer
    recommended: true
  mid:
    name: mid
    description: Molecular barcodes, called Multiplex Identifiers (MIDs), that are
      used to specifically tag unique samples in a sequencing run. Sequence should
      be reported in uppercase letters
    title: multiplex identifiers
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000047
    multivalued: false
    alias: mid
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
    pattern: ^[ACGTRKSYMWBHDVN]+$
    structured_pattern:
      syntax: ^{ambiguous_nucleotides}$
      interpolated: true
      partial_match: true
  assembly_name:
    name: assembly_name
    description: Name/version of the assembly provided by the submitter that is used
      in the genome browsers and in the community
    title: assembly name
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text} {text}'
    slot_uri: MIXS:0000057
    multivalued: false
    alias: assembly_name
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling
    title: temperature
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  compl_score:
    name: compl_score
    description: 'Completeness score is typically based on either the fraction of
      markers found as compared to a database or the percent of a genome found as
      compared to a closely related reference genome. High Quality Draft: >90%, Medium
      Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated
      completeness scores'
    title: completeness score
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '[high|med|low];{percentage}'
    slot_uri: MIXS:0000069
    multivalued: false
    alias: compl_score
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    recommended: true
  trnas:
    name: trnas
    description: The total number of tRNAs identified from the SAG or MAG
    title: number of standard tRNAs extracted
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{integer}'
    slot_uri: MIXS:0000067
    multivalued: false
    alias: trnas
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Misag
    - Miuvig
    range: string
    required: false
    recommended: false
  nucl_acid_ext:
    name: nucl_acid_ext
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the material separation to recover
      the nucleic acid fraction from a sample
    title: nucleic acid extraction
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000037
    multivalued: false
    alias: nucl_acid_ext
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  samp_size:
    name: samp_size
    description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
      sample collected
    title: amount or size of sample collected
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000001
    multivalued: false
    alias: samp_size
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  alt:
    name: alt
    description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric
      balloons and heights of places such as atmospheric layers and clouds. It is
      used to measure the height of an object which is above the earth's surface.
      In this context, the altitude measurement is the vertical distance between the
      earth's surface above sea level and the sampled position in the air
    title: altitude
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Air
    - HostAssociated
    - MiscellaneousNaturalOrArtificialEnvironment
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  estimated_size:
    name: estimated_size
    description: The estimated size of the genome prior to sequencing. Of particular
      importance in the sequencing of (eukaryotic) genome which could remain in draft
      form for a long or unspecified period
    title: estimated size
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{integer} bp'
    slot_uri: MIXS:0000024
    multivalued: false
    alias: estimated_size
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    required: false
    recommended: false
  source_mat_id:
    name: source_mat_id
    description: A unique identifier assigned to a material sample (as defined by
      http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular
      digital record of a material sample) used for extracting nucleic acids, and
      subsequent sequencing. The identifier can refer either to the original material
      collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher,
      /bio_material, or /culture_collection may or may not share the same value as
      the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id
      may both contain 'UAM:Herps:14' , referring to both the specimen voucher and
      sampled tissue with the same identifier. However, the /culture_collection qualifier
      may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
      would refer to an identifier from some derived culture from which the nucleic
      acids were extracted (e.g. xatc123 or ark:/2154/R2)
    title: source material identifiers
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000026
    multivalued: true
    alias: source_mat_id
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - SymbiontAssociated
    range: string
    recommended: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: 'Volume (ml) or mass (g) of total collected sample processed for
      DNA extraction. Note: total sample collected should be entered under the term
      Sample Size (MIXS:0000001)'
    title: sample volume or weight for DNA extraction
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000111
    multivalued: false
    alias: samp_vol_we_dna_ext
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  pathogenicity:
    name: pathogenicity
    description: To what is the entity pathogenic
    title: known pathogenicity
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000027
    multivalued: false
    alias: pathogenicity
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - Agriculture
    range: string
    required: false
    recommended: false
  lib_reads_seqd:
    name: lib_reads_seqd
    description: Total number of clones sequenced from the library
    title: library reads sequenced
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000040
    multivalued: false
    alias: lib_reads_seqd
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: integer
    recommended: true
  samp_collect_device:
    name: samp_collect_device
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
    title: sample collection device
    examples:
    - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000002
    multivalued: false
    alias: samp_collect_device
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
  number_contig:
    name: number_contig
    description: Total number of contigs in the cleaned/submitted assembly that makes
      up a given genome, SAG, MAG, or UViG
    title: number of contigs
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000060
    multivalued: false
    alias: number_contig
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: integer
    required: true
  biotic_relationship:
    name: biotic_relationship
    description: Description of relationship(s) between the subject organism and other
      organism(s) it is associated with. E.g., parasite on species X; mutualist with
      species Y. The target organism is the subject of the relationship, and the other
      organism(s) is the object
    title: observed biotic relationship
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000028
    multivalued: false
    alias: biotic_relationship
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    - Agriculture
    range: BIOTIC_RELATIONSHIP_ENUM
    required: false
    recommended: false
  trna_ext_software:
    name: trna_ext_software
    description: Tools used for tRNA identification
    title: tRNA extraction software
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000068
    multivalued: false
    alias: trna_ext_software
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Misag
    - Miuvig
    range: string
    required: false
    recommended: false
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  lib_layout:
    name: lib_layout
    description: Specify whether to expect single, paired, or other configuration
      of reads
    title: library layout
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000041
    multivalued: false
    alias: lib_layout
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: LIB_LAYOUT_ENUM
    recommended: true
  assembly_qual:
    name: assembly_qual
    description: 'The assembly quality category is based on sets of criteria outlined
      for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated,
      contiguous sequence per replicon without gaps or ambiguities with a consensus
      error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments
      where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes
      and at least 18 tRNAs. Medium Quality Draft:Many fragments with little to no
      review of assembly other than reporting of standard assembly statistics. Low
      Quality Draft:Many fragments with little to no review of assembly other than
      reporting of standard assembly statistics. Assembly statistics include, but
      are not limited to total assembly size, number of contigs, contig N50/L50, and
      maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence
      per replicon without gaps or ambiguities, with extensive manual review and editing
      to annotate putative gene functions and transcriptional units. High-quality
      draft genome: One or multiple fragments, totaling   90% of the expected genome
      or replicon sequence or predicted complete. Genome fragment(s): One or multiple
      fragments, totalling < 90% of the expected genome or replicon sequence, or for
      which no genome size could be estimated'
    title: assembly quality
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '[Finished genome|High-quality draft genome|Medium-quality
      draft genome|Low-quality draft genome|Genome fragment(s)]'
    slot_uri: MIXS:0000056
    multivalued: false
    alias: assembly_qual
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    required: true
  ref_biomaterial:
    name: ref_biomaterial
    description: Primary publication if isolated before genome publication; otherwise,
      primary genome report
    title: reference for biomaterial
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000025
    multivalued: false
    alias: ref_biomaterial
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    required: false
    recommended: false
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  project_name:
    name: project_name
    description: Name of the project within which the sequencing was organized
    title: project name
    examples:
    - value: Forest soil metagenome
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - project
    slot_uri: MIXS:0000092
    multivalued: false
    alias: project_name
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
  lib_vector:
    name: lib_vector
    description: Cloning vector type(s) used in construction of libraries
    title: library vector
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000042
    multivalued: false
    alias: lib_vector
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  host_spec_range:
    name: host_spec_range
    description: The range and diversity of host species that an organism is capable
      of infecting, defined by NCBI taxonomy identifier
    title: host specificity or range
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{integer}'
    slot_uri: MIXS:0000030
    multivalued: true
    alias: host_spec_range
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    - Agriculture
    range: string
    required: false
    recommended: false
  neg_cont_type:
    name: neg_cont_type
    annotations:
      Expected_value:
        tag: Expected_value
        value: enumeration or text
    description: The substance or equipment used as a negative control in an investigation
    title: negative control type
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - type
    slot_uri: MIXS:0001321
    multivalued: false
    alias: neg_cont_type
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: NEG_CONT_TYPE_ENUM
    recommended: true
  virus_enrich_appr:
    name: virus_enrich_appr
    description: List of approaches used to enrich the sample for viruses, if any
    title: virus enrichment approach
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000036
    alias: virus_enrich_appr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsVi
    - Miuvig
    range: VIRUS_ENRICH_APPR_ENUM
    required: true
  adapters:
    name: adapters
    description: Adapters provide priming sequences for both amplification and sequencing
      of the sample-library fragments. Both adapters should be reported; in uppercase
      letters
    title: adapters
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{dna};{dna}'
    slot_uri: MIXS:0000048
    multivalued: false
    alias: adapters
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  assembly_software:
    name: assembly_software
    description: Tool(s) used for assembly, including version number and parameters
    title: assembly software
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000058
    multivalued: false
    alias: assembly_software
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  tax_ident:
    name: tax_ident
    description: The phylogenetic marker(s) used to assign an organism name to the
      SAG or MAG
    title: taxonomic identity marker
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000053
    alias: tax_ident
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: TAX_IDENT_ENUM
    required: false
    recommended: false
  annot:
    name: annot
    description: Tool used for annotation, or for cases where annotation was provided
      by a community jamboree or model organism database rather than by a specific
      submitter
    title: annotation
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000059
    multivalued: false
    alias: annot
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    required: false
    recommended: false
  pos_cont_type:
    name: pos_cont_type
    description: The substance, mixture, product, or apparatus used to verify that
      a process which is part of an investigation delivers a true positive
    title: positive control type
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - type
    string_serialization: '{term} or {text}'
    slot_uri: MIXS:0001322
    multivalued: false
    alias: pos_cont_type
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  feat_pred:
    name: feat_pred
    description: Method used to predict UViGs features such as ORFs, integration site,
      etc
    title: feature prediction
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000061
    multivalued: false
    alias: feat_pred
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  compl_software:
    name: compl_software
    description: Tools used for completion estimate, i.e. checkm, anvi'o, busco
    title: completeness software
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{software};{version}'
    slot_uri: MIXS:0000070
    multivalued: false
    alias: compl_software
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    required: false
    recommended: false
  env_local_scale:
    name: env_local_scale
    annotations:
      Expected_value:
        tag: Expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling
    description: 'Report the entity or entities which are in the sample or specimen
      s local vicinity and which you believe have significant causal influences on
      your sample or specimen. We recommend using EnvO terms which are of smaller
      spatial grain than your entry for env_broad_scale. Terms, such as anatomical
      sites, from other OBO Library ontologies which interoperate with EnvO (e.g.
      UBERON) are accepted in this field. EnvO documentation about how to use the
      field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: local environmental context
    examples:
    - value: hillside [ENVO:01000333]
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - context
    - environmental
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
  samp_mat_process:
    name: samp_mat_process
    description: A brief description of any processing applied to the sample during
      or after retrieving the sample from environment, or a link to the relevant protocol(s)
      performed
    title: sample material processing
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000016
    multivalued: false
    alias: samp_mat_process
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  sim_search_meth:
    name: sim_search_meth
    description: Tool used to compare ORFs with database, along with version and cutoffs
      used
    title: similarity search method
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000063
    multivalued: false
    alias: sim_search_meth
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  host_disease_stat:
    name: host_disease_stat
    description: List of diseases with which the host has been diagnosed; can include
      multiple diagnoses. The value of the field depends on host; for humans the terms
      should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org,
      non-human host diseases are free text
    title: host disease status
    examples:
    - value: rabies [DOID:11260]
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000031
    multivalued: false
    alias: host_disease_stat
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    range: string
    recommended: true
  depth:
    name: depth
    description: The vertical distance below local surface. For sediment or soil samples
      depth is measured from sediment or soil surface, respectively. Depth can be
      reported as an interval for subsurface samples
    title: depth
    examples:
    - value: 10 meter
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_collect_method:
    name: samp_collect_method
    description: The method employed for collecting the sample
    title: sample collection method
    examples:
    - value: swabbing
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0001225
    multivalued: false
    alias: samp_collect_method
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  compl_appr:
    name: compl_appr
    description: The approach used to determine the completeness of a given genomic
      assembly, which would typically make use of a set of conserved marker genes
      or a closely related reference genome. For UViG completeness, include reference
      genome or group used, and contig feature suggesting a complete genome
    title: completeness approach
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000071
    alias: compl_appr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Misag
    - Miuvig
    range: COMPL_APPR_ENUM
    recommended: true
  specific_host:
    name: specific_host
    description: Report the host's taxonomic name and/or NCBI taxonomy ID
    title: host scientific name
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}|{NCBI taxid}'
    slot_uri: MIXS:0000029
    multivalued: false
    alias: specific_host
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    - Agriculture
    range: string
    required: false
    recommended: false
  env_medium:
    name: env_medium
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top)'
    title: environmental medium
    examples:
    - value: bluegrass field soil [ENVO:00005789]
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - environmental
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  samp_taxon_id:
    name: samp_taxon_id
    description: NCBI taxon id of the sample.  Maybe be a single taxon or mixed taxa
      sample. Use 'synthetic metagenome  for mock community/positive controls, or
      'blank sample' for negative controls
    title: taxonomy ID of DNA sample
    examples:
    - value: Gut Metagenome [NCBITaxon:749906]
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - dna
    - identifier
    - sample
    - taxon
    slot_uri: MIXS:0001320
    multivalued: false
    alias: samp_taxon_id
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$
    structured_pattern:
      syntax: ^{text} \[{NCBItaxon_id}\]$
      interpolated: true
      partial_match: true
  geo_loc_name:
    name: geo_loc_name
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - geographic
    - location
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - SymbiontAssociated
    range: string
    required: true
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  collection_date:
    name: collection_date
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: '2013-03-25T12:42:31+01:00'
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - date
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - SymbiontAssociated
    range: datetime
    required: true
  seq_meth:
    name: seq_meth
    description: Sequencing machine used. Where possible the term should be taken
      from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
    title: sequencing method
    examples:
    - value: 454 Genome Sequencer FLX [OBI:0000702]
    in_subset:
    - sequencing
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - method
    slot_uri: MIXS:0000050
    multivalued: false
    alias: seq_meth
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  lat_lon:
    name: lat_lon
    annotations:
      Expected_value:
        tag: Expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - geographic
    - location
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - SymbiontAssociated
    range: string
    required: true
    pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$
    structured_pattern:
      syntax: ^{lat} {lon}$
      interpolated: true
      partial_match: true
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit
    title: elevation
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - Air
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  env_broad_scale:
    name: env_broad_scale
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
    - value: rangeland biome [ENVO:01000247]
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - context
    - environmental
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  tax_class:
    name: tax_class
    description: Method used for taxonomic classification, along with reference database
      used, classification rank, and thresholds used to classify new genomes
    title: taxonomic classification
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000064
    multivalued: false
    alias: tax_class
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  experimental_factor:
    name: experimental_factor
    description: Variable aspects of an experiment design that can be used to describe
      an experiment, or set of experiments, in an increasingly detailed manner. This
      field accepts ontology terms from Experimental Factor Ontology (EFO) and/or
      Ontology for Biomedical Investigations (OBI)
    title: experimental factor
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000008
    multivalued: true
    alias: experimental_factor
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
    pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
  sort_tech:
    name: sort_tech
    description: Method used to sort/isolate cells or particles of interest
    title: sorting technology
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000075
    multivalued: false
    alias: sort_tech
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Misag
    - Miuvig
    range: SORT_TECH_ENUM
    recommended: true
  sc_lysis_approach:
    name: sc_lysis_approach
    description: Method used to free DNA from interior of the cell(s) or particle(s)
    title: single cell or viral particle lysis approach
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000076
    multivalued: false
    alias: sc_lysis_approach
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Misag
    - Miuvig
    range: SC_LYSIS_APPROACH_ENUM
    recommended: true
  sc_lysis_method:
    name: sc_lysis_method
    description: Name of the kit or standard protocol used for cell(s) or particle(s)
      lysis
    title: single cell or viral particle lysis kit protocol
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000054
    multivalued: false
    alias: sc_lysis_method
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Misag
    - Miuvig
    range: string
    recommended: true
  wga_amp_appr:
    name: wga_amp_appr
    description: Method used to amplify genomic DNA in preparation for sequencing
    title: WGA amplification approach
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000055
    multivalued: false
    alias: wga_amp_appr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Misag
    - Miuvig
    range: WGA_AMP_APPR_ENUM
    recommended: true
  wga_amp_kit:
    name: wga_amp_kit
    description: Kit used to amplify genomic DNA in preparation for sequencing
    title: WGA amplification kit
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000006
    multivalued: false
    alias: wga_amp_kit
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Misag
    - Miuvig
    range: string
    recommended: true
  bin_param:
    name: bin_param
    description: The parameters that have been applied during the extraction of genomes
      from metagenomic datasets
    title: binning parameters
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000077
    alias: bin_param
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Miuvig
    range: BIN_PARAM_ENUM
    recommended: true
  bin_software:
    name: bin_software
    description: Tool(s) used for the extraction of genomes from metagenomic datasets,
      where possible include a product ID (PID) of the tool(s) used
    title: binning software
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{software};{version}{PID}'
    slot_uri: MIXS:0000078
    multivalued: false
    alias: bin_software
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Miuvig
    range: string
    recommended: true
  reassembly_bin:
    name: reassembly_bin
    description: Has an assembly been performed on a genome bin extracted from a metagenomic
      assembly?
    title: reassembly post binning
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000079
    multivalued: false
    alias: reassembly_bin
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Miuvig
    range: boolean
    recommended: true
  mag_cov_software:
    name: mag_cov_software
    description: Tool(s) used to determine the genome coverage if coverage is used
      as a binning parameter in the extraction of genomes from metagenomic datasets
    title: MAG coverage software
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000080
    multivalued: false
    alias: mag_cov_software
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Mimag
    - Miuvig
    range: MAG_COV_SOFTWARE_ENUM
    required: false
    recommended: false
  vir_ident_software:
    name: vir_ident_software
    description: Tool(s) used for the identification of UViG as a viral genome, software
      or protocol name including version number, parameters, and cutoffs used
    title: viral identification software
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000081
    multivalued: false
    alias: vir_ident_software
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    required: true
  pred_genome_type:
    name: pred_genome_type
    description: Type of genome predicted for the UViG
    title: predicted genome type
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '[DNA|dsDNA|ssDNA|RNA|dsRNA|ssRNA|ssRNA (+)|ssRNA (-)|mixed|uncharacterized]'
    slot_uri: MIXS:0000082
    multivalued: false
    alias: pred_genome_type
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    required: true
  pred_genome_struc:
    name: pred_genome_struc
    description: Expected structure of the viral genome
    title: predicted genome structure
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000083
    multivalued: false
    alias: pred_genome_struc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: PRED_GENOME_STRUC_ENUM
    required: true
  detec_type:
    name: detec_type
    description: Type of UViG detection
    title: detection type
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '[independent sequence (UViG)|provirus (UpViG)]'
    slot_uri: MIXS:0000084
    multivalued: false
    alias: detec_type
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    required: true
  otu_class_appr:
    name: otu_class_appr
    description: Cutoffs and approach used when clustering  species-level  OTUs. Note
      that results from standard 95% ANI / 85% AF clustering should be provided alongside
      OTUS defined from another set of thresholds, even if the latter are the ones
      primarily used during the analysis
    title: OTU classification approach
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{ANI cutoff};{AF cutoff};{clustering method}'
    slot_uri: MIXS:0000085
    multivalued: false
    alias: otu_class_appr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    recommended: true
  otu_seq_comp_appr:
    name: otu_seq_comp_appr
    description: Tool and thresholds used to compare sequences when computing "species-level"
      OTUs
    title: OTU sequence comparison approach
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000086
    multivalued: false
    alias: otu_seq_comp_appr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    recommended: true
  otu_db:
    name: otu_db
    description: Reference database (i.e. sequences not generated as part of the current
      study) used to cluster new genomes in "species-level" OTUs, if any
    title: OTU database
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{database};{version}'
    slot_uri: MIXS:0000087
    multivalued: false
    alias: otu_db
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    recommended: true
  host_pred_appr:
    name: host_pred_appr
    description: Tool or approach used for host prediction
    title: host prediction approach
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000088
    multivalued: false
    alias: host_pred_appr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: HOST_PRED_APPR_ENUM
    recommended: true
  host_pred_est_acc:
    name: host_pred_est_acc
    description: For each tool or approach used for host prediction, estimated false
      discovery rates should be included, either computed de novo or from the literature
    title: host prediction estimated accuracy
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000089
    multivalued: false
    alias: host_pred_est_acc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Miuvig
    range: string
    recommended: true
  associated_resource:
    name: associated_resource
    annotations:
      Expected_value:
        tag: Expected_value
        value: reference to resource
    description: A related resource that is referenced, cited, or otherwise associated
      to the sequence
    title: relevant electronic resources
    examples:
    - value: http://www.earthmicrobiome.org/
    in_subset:
    - sequencing
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - resource
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000091
    multivalued: true
    alias: associated_resource
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  sop:
    name: sop
    description: Standard operating procedures used in assembly and/or annotation
      of genomes, metagenomes or environmental sequences
    title: relevant standard operating procedures
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000090
    multivalued: true
    alias: sop
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    range: string
    recommended: true
  hcr:
    name: hcr
    description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
      defined as a natural environmental feature containing large amounts of hydrocarbons
      at high concentrations potentially suitable for commercial exploitation. This
      term should not be confused with the Hydrocarbon Occurrence term which also
      includes hydrocarbon-rich environments with currently limited commercial interest
      such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
      entry in "additional info" field
    title: hydrocarbon resource type
    examples:
    - value: Oil Sand
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - hydrocarbon
    - resource
    - type
    slot_uri: MIXS:0000988
    multivalued: false
    alias: hcr
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: HCR_ENUM
    required: true
  hc_produced:
    name: hc_produced
    description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
      etc). If "other" is specified, please propose entry in "additional info" field
    title: hydrocarbon type produced
    examples:
    - value: Gas
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - hydrocarbon
    - type
    slot_uri: MIXS:0000989
    multivalued: false
    alias: hc_produced
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: HC_PRODUCED_ENUM
    required: true
  basin:
    name: basin
    description: Name of the basin (e.g. Campos)
    title: basin name
    examples:
    - value: Campos
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000290
    multivalued: false
    alias: basin
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: true
  field:
    name: field
    description: Name of the hydrocarbon field (e.g. Albacora)
    title: field name
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000291
    multivalued: false
    alias: field
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
  reservoir:
    name: reservoir
    description: Name of the reservoir (e.g. Carapebus)
    title: reservoir name
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000303
    multivalued: false
    alias: reservoir
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
  hcr_temp:
    name: hcr_temp
    description: Original temperature of the hydrocarbon resource
    title: hydrocarbon resource original temperature
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000393
    multivalued: false
    alias: hcr_temp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  tvdss_of_hcr_temp:
    name: tvdss_of_hcr_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original temperature was measured (e.g. 1345 m)
    title: depth (TVDSS) of hydrocarbon resource temperature
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - depth
    - hydrocarbon
    - resource
    - temperature
    slot_uri: MIXS:0000394
    multivalued: false
    alias: tvdss_of_hcr_temp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  hcr_pressure:
    name: hcr_pressure
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: atmosphere, kilopascal
    description: Original pressure of the hydrocarbon resource
    title: hydrocarbon resource original pressure
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - hydrocarbon
    - pressure
    - resource
    slot_uri: MIXS:0000395
    multivalued: false
    alias: hcr_pressure
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  tvdss_of_hcr_press:
    name: tvdss_of_hcr_press
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original pressure was measured (e.g. 1578 m)
    title: depth (TVDSS) of hydrocarbon resource pressure
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - depth
    - hydrocarbon
    - pressure
    - resource
    slot_uri: MIXS:0000397
    multivalued: false
    alias: tvdss_of_hcr_press
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  lithology:
    name: lithology
    description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
      If "other" is specified, please propose entry in "additional info" field'
    title: lithology
    examples:
    - value: Volcanic
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - lithology
    slot_uri: MIXS:0000990
    multivalued: false
    alias: lithology
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: LITHOLOGY_ENUM
    recommended: true
  depos_env:
    name: depos_env
    description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
      If "other" is specified, please propose entry in "additional info" field
    title: depositional environment
    examples:
    - value: Marine - Reef
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000992
    multivalued: false
    alias: depos_env
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: DEPOS_ENV_ENUM
    recommended: true
  hcr_geol_age:
    name: hcr_geol_age
    description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: hydrocarbon resource geological age
    examples:
    - value: Silurian
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - age
    - hydrocarbon
    - resource
    slot_uri: MIXS:0000993
    multivalued: false
    alias: hcr_geol_age
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: SHARED_ENUM_5
    recommended: true
  hcr_fw_salinity:
    name: hcr_fw_salinity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
    description: Original formation water salinity (prior to secondary recovery e.g.
      Waterflooding) expressed as TDS
    title: formation water salinity
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - salinity
    - water
    slot_uri: MIXS:0000406
    multivalued: false
    alias: hcr_fw_salinity
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sulfate_fw:
    name: sulfate_fw
    description: Original sulfate concentration in the hydrocarbon resource
    title: sulfate in formation water
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000407
    multivalued: false
    alias: sulfate_fw
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  vfa_fw:
    name: vfa_fw
    description: Original volatile fatty acid concentration in the hydrocarbon resource
    title: vfa in formation water
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000408
    multivalued: false
    alias: vfa_fw
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  prod_start_date:
    name: prod_start_date
    description: Date of field's first production
    title: production start date
    examples:
    - value: '2013-03-25T12:42:31+01:00'
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - date
    - production
    - start
    slot_uri: MIXS:0001008
    multivalued: false
    alias: prod_start_date
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: datetime
    recommended: true
  prod_rate:
    name: prod_rate
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: cubic meter per day
    description: Oil and/or gas production rates per well (e.g. 524 m3 / day)
    title: production rate
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - production
    - rate
    slot_uri: MIXS:0000452
    multivalued: false
    alias: prod_rate
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_prod_rate:
    name: water_prod_rate
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: cubic meter per day
    description: Water production rates per well (e.g. 987 m3 / day)
    title: water production rate
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - production
    - rate
    - water
    slot_uri: MIXS:0000453
    multivalued: false
    alias: water_prod_rate
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_cut:
    name: water_cut
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: Current amount of water (%) in a produced fluid stream; or the average
      of the combined streams
    title: water cut
    comments:
    - percent or float?
    examples:
    - value: 45%
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - water
    slot_uri: MIXS:0000454
    alias: water_cut
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  iwf:
    name: iwf
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: Proportion of the produced fluids derived from injected water at
      the time of sampling. (e.g. 87%)
    title: injection water fraction
    comments:
    - pattern was "[0-9]*\\.?[0-9]+ ?%"
    - percent or float?
    examples:
    - value: '0.79'
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - fraction
    - water
    slot_uri: MIXS:0000455
    alias: iwf
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: float
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  add_recov_method:
    name: add_recov_method
    annotations:
      Expected_value:
        tag: Expected_value
        value: enumeration;timestamp
    description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed
      for increase of hydrocarbon recovery from resource and start date for each one
      of them. If "other" is specified, please propose entry in "additional info"
      field
    title: secondary and tertiary recovery methods and start date
    examples:
    - value: Polymer Addition;2018-06-21T14:30Z
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - date
    - method
    - recover
    - secondary
    - start
    string_serialization: '[Water Injection|Dump Flood|Gas Injection|Wag Immiscible
      Injection|Polymer Addition|Surfactant Addition|Not Applicable|other];{timestamp}'
    slot_uri: MIXS:0001009
    multivalued: false
    alias: add_recov_method
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: true
  iw_bt_date_well:
    name: iw_bt_date_well
    description: Injection water breakthrough date per well following a secondary
      and/or tertiary recovery
    title: injection water breakthrough date of specific well
    examples:
    - value: '2013-03-25T12:42:31+01:00'
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - date
    - water
    slot_uri: MIXS:0001010
    multivalued: false
    alias: iw_bt_date_well
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: datetime
    required: false
    recommended: false
  biocide:
    name: biocide
    annotations:
      Expected_value:
        tag: Expected_value
        value: name;name;timestamp
    description: List of biocides (commercial name of product and supplier) and date
      of administration
    title: biocide administration
    examples:
    - value: ALPHA 1427;Baker Hughes;2008-01-23
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - administration
    string_serialization: '{text};{text};{timestamp}'
    slot_uri: MIXS:0001011
    multivalued: false
    alias: biocide
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
  biocide_admin_method:
    name: biocide_admin_method
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;frequency;duration;duration
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
    description: Method of biocide administration (dose, frequency, duration, time
      elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3
      days)
    title: biocide administration method
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - administration
    - method
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}'
    slot_uri: MIXS:0000456
    multivalued: false
    alias: biocide_admin_method
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
  chem_treatment:
    name: chem_treatment
    annotations:
      Expected_value:
        tag: Expected_value
        value: name;name;timestamp
    description: List of chemical compounds administered upstream the sampling location
      where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors,
      demulsifiers, and other production chemicals etc.). The commercial name of the
      product and name of the supplier should be provided. The date of administration
      should also be included
    title: chemical treatment
    examples:
    - value: ACCENT 1125;DOW;2010-11-17
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - treatment
    string_serialization: '{text};{text};{timestamp}'
    slot_uri: MIXS:0001012
    multivalued: false
    alias: chem_treatment
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
  chem_treat_method:
    name: chem_treat_method
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;frequency;duration;duration
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
    description: Method of chemical administration(dose, frequency, duration, time
      elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1
      hr; 0 days)
    title: chemical treatment method
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - method
    - treatment
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}'
    slot_uri: MIXS:0000457
    multivalued: false
    alias: chem_treat_method
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
  samp_loc_corr_rate:
    name: samp_loc_corr_rate
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: millimeter per year
    description: Metal corrosion rate is the speed of metal deterioration due to environmental
      conditions. As environmental conditions change corrosion rates change accordingly.
      Therefore, long term corrosion rates are generally more informative than short
      term rates and for that reason they are preferred during reporting. In the case
      of suspected MIC, corrosion rate measurements at the time of sampling might
      provide insights into the involvement of certain microbial community members
      in MIC as well as potential microbial interplays
    title: corrosion rate at sample location
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - location
    - rate
    - sample
    slot_uri: MIXS:0000136
    multivalued: false
    alias: samp_loc_corr_rate
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  samp_well_name:
    name: samp_well_name
    description: Name of the well (e.g. BXA1123) where sample was taken
    title: sample well name
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    slot_uri: MIXS:0000296
    multivalued: false
    alias: samp_well_name
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
  win:
    name: win
    description: 'A unique identifier of a well or wellbore. This is part of the Global
      Framework for Well Identification initiative which is compiled by the Professional
      Petroleum Data Management Association (PPDM) in an effort to improve well identification
      systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
    title: well identification number
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - identifier
    - number
    slot_uri: MIXS:0000297
    multivalued: false
    alias: win
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
  samp_type:
    name: samp_type
    description: The type of material from which the sample was obtained. For the
      Hydrocarbon package, samples include types like core, rock trimmings, drill
      cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
      produced water, injected water, swabs, etc. For the Food Package, samples are
      usually categorized as food, body products or tissues, or environmental material.
      This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
    title: sample type
    examples:
    - value: built environment sample [GENEPIO:0001248]
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    - type
    slot_uri: MIXS:0000998
    multivalued: false
    alias: samp_type
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  samp_subtype:
    name: samp_subtype
    description: Name of sample sub-type. For example if "sample type" is "Produced
      Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
      please propose entry in "additional info" field
    title: sample subtype
    examples:
    - value: biofilm
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    slot_uri: MIXS:0000999
    multivalued: false
    alias: samp_subtype
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: SAMP_SUBTYPE_ENUM
    recommended: true
  samp_collect_point:
    name: samp_collect_point
    description: Sampling point on the asset were sample was collected (e.g. Wellhead,
      storage tank, separator, etc). If "other" is specified, please propose entry
      in "additional info" field
    title: sample collection point
    examples:
    - value: well
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    slot_uri: MIXS:0001015
    multivalued: false
    alias: samp_collect_point
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: SAMP_COLLECT_POINT_ENUM
    required: true
  pressure:
    name: pressure
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: atmosphere
    description: Pressure to which the sample is subject to, in atmospheres
    title: pressure
    examples:
    - value: 50 atmosphere
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - pressure
    slot_uri: MIXS:0000412
    multivalued: false
    alias: pressure
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: OXY_STAT_SAMP_ENUM
    required: false
    recommended: false
  samp_preserv:
    name: samp_preserv
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milliliter
    description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde,
      etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)
    title: preservative added to sample
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    slot_uri: MIXS:0000463
    multivalued: false
    alias: samp_preserv
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  samp_transport_cond:
    name: samp_transport_cond
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: days;degree Celsius
    description: Sample transport duration (in days or hrs) and temperature the sample
      was exposed to (e.g. 5.5 days; 20   C)
    title: sample transport conditions
    examples:
    - value: 5 days;-20 degree Celsius
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - condition
    - sample
    - transport
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000410
    multivalued: false
    alias: samp_transport_cond
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
  samp_store_temp:
    name: samp_store_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    examples:
    - value: -80 degree Celsius
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sample
    - storage
    - temperature
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_store_temp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored. Indicate the duration for
      which the sample was stored written in ISO 8601 format
    title: sample storage duration
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    examples:
    - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
  org_count_qpcr_info:
    name: org_count_qpcr_info
    annotations:
      Expected_value:
        tag: Expected_value
        value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial
          denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
          elongation:degrees_minutes; total cycles
      Preferred_unit:
        tag: Preferred_unit
        value: number of cells per gram (or ml or cm^2)
    description: 'If qpcr was used for the cell count, the target gene name, the primer
      sequence and the cycling conditions should also be provided. (Example: 16S rrna;
      FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
      annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
      30 cycles)'
    title: organism count qPCR information
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - count
    - information
    - organism
    string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles'
    slot_uri: MIXS:0000099
    multivalued: false
    alias: org_count_qpcr_info
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
  ph:
    name: ph
    description: Ph measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid
    title: pH
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0001001
    multivalued: false
    alias: ph
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - FoodFarmEnvironment
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - WastewaterSludge
    - Water
    range: float
    recommended: true
  salinity:
    name: salinity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: practical salinity unit, percentage
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater
    title: salinity
    examples:
    - value: 25 practical salinity unit
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - salinity
    slot_uri: MIXS:0000183
    multivalued: false
    alias: salinity
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  alkalinity:
    name: alkalinity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milliequivalent per liter, milligram per liter
    description: Alkalinity, the ability of a solution to neutralize acids to the
      equivalence point of carbonate or bicarbonate
    title: alkalinity
    examples:
    - value: 50 milligram per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - alkalinity
    slot_uri: MIXS:0000421
    multivalued: false
    alias: alkalinity
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  alkalinity_method:
    name: alkalinity_method
    description: Method used for alkalinity measurement
    title: alkalinity method
    examples:
    - value: titration
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - alkalinity
    - method
    slot_uri: MIXS:0000298
    multivalued: false
    alias: alkalinity_method
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - Water
    range: string
    required: false
    recommended: false
  sulfate:
    name: sulfate
    description: Concentration of sulfate in the sample
    title: sulfate
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000423
    multivalued: false
    alias: sulfate
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sulfide:
    name: sulfide
    description: Concentration of sulfide in the sample
    title: sulfide
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000424
    multivalued: false
    alias: sulfide
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_sulfur:
    name: tot_sulfur
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of total sulfur in the sample
    title: total sulfur
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - sulfur
    - total
    slot_uri: MIXS:0000419
    multivalued: false
    alias: tot_sulfur
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  nitrate:
    name: nitrate
    description: Concentration of nitrate in the sample
    title: nitrate
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000425
    multivalued: false
    alias: nitrate
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  nitrite:
    name: nitrite
    description: Concentration of nitrite in the sample
    title: nitrite
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000426
    multivalued: false
    alias: nitrite
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ammonium:
    name: ammonium
    description: Concentration of ammonium in the sample
    title: ammonium
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000427
    multivalued: false
    alias: ammonium
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_nitro:
    name: tot_nitro
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: microgram per liter, micromole per liter, milligram per liter
    description: 'Total nitrogen concentration of water samples, calculated by: total
      nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
      without filtering, reported as nitrogen'
    title: total nitrogen concentration
    examples:
    - value: 50 micromole per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - concentration
    - nitrogen
    - total
    slot_uri: MIXS:0000102
    multivalued: false
    alias: tot_nitro
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_iron:
    name: diss_iron
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
    description: Concentration of dissolved iron in the sample
    title: dissolved iron
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - dissolved
    slot_uri: MIXS:0000139
    multivalued: false
    alias: diss_iron
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sodium:
    name: sodium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Sodium concentration in the sample
    title: sodium
    examples:
    - value: 10.5 milligram per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000428
    multivalued: false
    alias: sodium
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  chloride:
    name: chloride
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of chloride in the sample
    title: chloride
    examples:
    - value: 5000 milligram per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000429
    multivalued: false
    alias: chloride
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  potassium:
    name: potassium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of potassium in the sample
    title: potassium
    examples:
    - value: 463 milligram per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000430
    multivalued: false
    alias: potassium
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  magnesium:
    name: magnesium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: mole per liter, milligram per liter, parts per million, micromole per
          kilogram
    description: Concentration of magnesium in the sample
    title: magnesium
    examples:
    - value: 52.8 micromole per kilogram
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000431
    multivalued: false
    alias: magnesium
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  calcium:
    name: calcium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, micromole per liter, parts per million
    description: Concentration of calcium in the sample
    title: calcium
    examples:
    - value: 0.2 micromole per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000432
    multivalued: false
    alias: calcium
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_iron:
    name: tot_iron
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, milligram per kilogram
    description: Concentration of total iron in the sample
    title: total iron
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - total
    slot_uri: MIXS:0000105
    multivalued: false
    alias: tot_iron
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_org_carb:
    name: diss_org_carb
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter
    description: Concentration of dissolved organic carbon in the sample, liquid portion
      of the sample, or aqueous phase of the fluid
    title: dissolved organic carbon
    examples:
    - value: 197 micromole per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - carbon
    - dissolved
    - organic
    slot_uri: MIXS:0000433
    multivalued: false
    alias: diss_org_carb
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_carb:
    name: diss_inorg_carb
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: microgram per liter, milligram per liter, parts per million
    description: Dissolved inorganic carbon concentration in the sample, typically
      measured after filtering the sample using a 0.45 micrometer filter
    title: dissolved inorganic carbon
    examples:
    - value: 2059 micromole per kilogram
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - carbon
    - dissolved
    - inorganic
    slot_uri: MIXS:0000434
    multivalued: false
    alias: diss_inorg_carb
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_phosp:
    name: diss_inorg_phosp
    description: Concentration of dissolved inorganic phosphorus in the sample
    title: dissolved inorganic phosphorus
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000106
    multivalued: false
    alias: diss_inorg_phosp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - Water
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_phosp:
    name: tot_phosp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
    description: 'Total phosphorus concentration in the sample, calculated by: total
      phosphorus = total dissolved phosphorus + particulate phosphorus'
    title: total phosphorus
    examples:
    - value: 0.03 milligram per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - phosphorus
    - total
    slot_uri: MIXS:0000117
    multivalued: false
    alias: tot_phosp
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  suspend_solids:
    name: suspend_solids
    annotations:
      Expected_value:
        tag: Expected_value
        value: suspended solid name;measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: gram, microgram, milligram per liter, mole per liter, gram per liter,
          part per million
    description: Concentration of substances including a wide variety of material,
      such as silt, decaying plant and animal matter; can include multiple substances
    title: suspended solids
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - solids
    - suspended
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000150
    multivalued: true
    alias: suspend_solids
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - WastewaterSludge
    range: string
    required: false
    recommended: false
  density:
    name: density
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: gram per cubic meter, gram per cubic centimeter
    description: Density of the sample, which is its mass per unit volume (aka volumetric
      mass density)
    title: density
    examples:
    - value: 1000 kilogram per cubic meter
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - density
    slot_uri: MIXS:0000435
    multivalued: false
    alias: density
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_carb_dioxide:
    name: diss_carb_dioxide
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter
    description: Concentration of dissolved carbon dioxide in the sample or liquid
      portion of the sample
    title: dissolved carbon dioxide
    examples:
    - value: 5 milligram per liter
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - carbon
    - dissolved
    slot_uri: MIXS:0000436
    multivalued: false
    alias: diss_carb_dioxide
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_oxygen_fluid:
    name: diss_oxygen_fluid
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per kilogram, milligram per liter
    description: Concentration of dissolved oxygen in the oil field produced fluids
      as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)
    title: dissolved oxygen in fluids
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - dissolved
    - oxygen
    slot_uri: MIXS:0000438
    multivalued: false
    alias: diss_oxygen_fluid
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  vfa:
    name: vfa
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of Volatile Fatty Acids in the sample
    title: volatile fatty acids
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000152
    multivalued: false
    alias: vfa
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  benzene:
    name: benzene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of benzene in the sample
    title: benzene
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000153
    multivalued: false
    alias: benzene
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  toluene:
    name: toluene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of toluene in the sample
    title: toluene
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000154
    multivalued: false
    alias: toluene
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ethylbenzene:
    name: ethylbenzene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of ethylbenzene in the sample
    title: ethylbenzene
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000155
    multivalued: false
    alias: ethylbenzene
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  xylene:
    name: xylene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
    description: Concentration of xylene in the sample
    title: xylene
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000156
    multivalued: false
    alias: xylene
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  api:
    name: api
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degrees API
    description: 'API gravity is a measure of how heavy or light a petroleum liquid
      is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
      31.1   API)'
    title: API gravity
    examples:
    - value: 31.1 API
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000157
    multivalued: false
    alias: api
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tan:
    name: tan
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
    description: 'Total Acid Number  (TAN) is a measurement of acidity that is determined
      by the amount of  potassium hydroxide  in milligrams that is needed to neutralize
      the acids in one gram of oil.  It is an important quality measurement of  crude
      oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
    title: total acid number
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - number
    - total
    slot_uri: MIXS:0000120
    multivalued: false
    alias: tan
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  viscosity:
    name: viscosity
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: cP at degree Celsius
    description: A measure of oil's resistance  to gradual deformation by  shear stress  or  tensile
      stress (e.g. 3.5 cp; 100   C)
    title: viscosity
    from_schema: https://w3id.org/mixs-6-2-rc
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000126
    multivalued: false
    alias: viscosity
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
  pour_point:
    name: pour_point
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
    description: 'Temperature at which a liquid becomes semi solid and loses its flow
      characteristics. In crude oil a high  pour point  is generally associated with
      a high paraffin content, typically found in crude deriving from a larger proportion
      of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
    title: pour point
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000127
    multivalued: false
    alias: pour_point
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  saturates_pc:
    name: saturates_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: saturates wt%
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000131
    multivalued: false
    alias: saturates_pc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  aromatics_pc:
    name: aromatics_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: aromatics wt%
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000133
    multivalued: false
    alias: aromatics_pc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  resins_pc:
    name: resins_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: resins wt%
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000134
    multivalued: false
    alias: resins_pc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  asphaltenes_pc:
    name: asphaltenes_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: asphaltenes wt%
    from_schema: https://w3id.org/mixs-6-2-rc
    slot_uri: MIXS:0000135
    multivalued: false
    alias: asphaltenes_pc
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  misc_param:
    name: misc_param
    annotations:
      Expected_value:
        tag: Expected_value
        value: parameter name;measurement value
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    examples:
    - value: Bicarbonate ion concentration;2075 micromole per kilogram
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - parameter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: false
    recommended: false
  additional_info:
    name: additional_info
    description: Information that doesn't fit anywhere else. Can also be used to propose
      new entries for fields with controlled vocabulary
    title: additional info
    from_schema: https://w3id.org/mixs-6-2-rc
    keywords:
    - information
    slot_uri: MIXS:0000300
    multivalued: false
    alias: additional_info
    owner: MiuvigHydrocarbonResourcesFluidsSwabs
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: false
    recommended: false
class_uri: MIXS:0010012_0016016